Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117100917_117101752_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117100917 - 117101752

Intron Length:

836

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTATGTCAT

5'SS Class:

major

3'SS Sequence:

CTTCTCTGCTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

TAAACTCTAACA

Flanking Amino Acid:

EEEEIFKQGEMNKLKRIDFS

Intron Amino Acid Position:

223

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.65

73.4

37.3

Major BPS

81.6

0.78

0.8

24.9

Major PPT

73.2

0.52

0.8

72.9

31.9

Minor 5ss

43.7

-0.7

2.8

58.6

40.3

Minor BPS

56.8

0.21

1.7

67.38

38.3

Associated Gene:

Gene:

ACOT9

Ensembl Gene ID:

ENSAPLG00000012395

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029404

117085591 - 117107056

21466

ENSAPLT00000012956

117085656 - 117104869

19214