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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117103634_117104380_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
117103634 - 117104380
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTGTTCTTGAGA
Flanking Amino Acid:
ELGWATACSCGGSRPFIVSV
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.2
38.5
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
89.6
0.89
0.6
88.7
20.5
Minor 5ss
34.7
-1.7
2.8
35.3
41.4
Minor BPS
64.3
0.44
1.6
73.38
39

Associated Gene:

Gene:
ACOT9
Ensembl Gene ID:
ENSAPLG00000012395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029404
117085591 - 117107056
21466
ENSAPLT00000012956
117085656 - 117104869
19214