Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117104808_117105061_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117104808 - 117105061

Intron Length:

254

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCAAGTATC

5'SS Class:

strong_major

3'SS Sequence:

CACCTGATTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TTTTCTTCACCT

Flanking Amino Acid:

VPRVVPKTYGESMLYLDGKR

Intron Amino Acid Position:

433

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.8

1.18

0.7

98.3

5.31

Major BPS

84.4

0.85

34.5

Major PPT

70.2

0.45

65.6

39.5

Minor 5ss

-2.3

3.8

44.9

43.2

Minor BPS

66.5

0.6

1.8

87.98

37.6

Associated Gene:

Gene:

ACOT9

Ensembl Gene ID:

ENSAPLG00000012395

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029404

117085591 - 117107056

21466