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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117110034_117111382_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117110034 - 117111382
Intron Length:
1349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
GTTTCTTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
GTTTCTTGCACA
Flanking Amino Acid:
PAGWKPGSETIIPDPAGKLK
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.4
39.5
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
76.6
0.6
0.9
72
38
Minor 5ss
36.7
-1.5
3
50.3
40.1
Minor BPS
57.1
0.22
1.9
72.92
38.9

Associated Gene:

Gene:
PRDX4
Ensembl Gene ID:
ENSAPLG00000013037
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013584
117109983 - 117118603
8621