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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117110432_117111382_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117110432 - 117111382
Intron Length:
951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
TTGATTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTGATTTAATT
Flanking Amino Acid:
PAGWKPGSETIKPEEAMRVW
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.4
39.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
67
0.38
1
67.8
42.5
Minor 5ss
36.7
-1.5
3
50.3
40.1
Minor BPS
68.2
0.65
1.6
84.41
36.8

Associated Gene:

Gene:
PRDX4
Ensembl Gene ID:
ENSAPLG00000013037
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023576
117110030 - 117118603
8574