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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117114335_117114816_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
117114335 - 117114816
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTTCTTTCAAA
Flanking Amino Acid:
SVDSKFTHLAWINTPRKQGG
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
73.6
0.53
1
74.8
33.2
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
60.7
0.33
1.8
74.83
36.6

Associated Gene:

Gene:
PRDX4
Ensembl Gene ID:
ENSAPLG00000013037
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023576
117110030 - 117118603
8574
ENSAPLT00000013584
117109983 - 117118603
8621