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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117155165_117223771_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117155165 - 117223771
Intron Length:
68607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCG
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
TGCCACTGAATT
Flanking Amino Acid:
DQHHTDLILKISRMGQK*
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
69.7
41.3
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
82.2
0.72
0.7
80.8
30.8
Minor 5ss
38.5
-1.3
3.1
50.4
46
Minor BPS
51.9
0.14
1.7
68.49
42

Associated Gene:

Gene:
PTCHD1
Ensembl Gene ID:
ENSAPLG00000012537
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017731
117155141 - 117224234
69094