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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11720591_11725727_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11720591 - 11725727
Intron Length:
5137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTGCCACCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
TCCTTTGCCACC
Flanking Amino Acid:
ILGGDEPGQPILIGAVIAMG
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
76.4
34
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
68.4
0.41
0.8
60
36.7
Minor 5ss
34.9
-1.7
3
52.2
44.4
Minor BPS
38.6
-0.9
2.3
48.67
42.4

Associated Gene:

Gene:
MAGI2
Ensembl Gene ID:
ENSAPLG00000012418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012943
11484480 - 11769168
284689