Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117268438_117309848_R

Intron Information:

Intron Rank:

144601

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

117268438 - 117309848

Intron Length:

41411

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGACATAG

5'SS Class:

major

3'SS Sequence:

AAAGCCCCAGGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAAGCAC

U12 Branch Point Sequence:

ACCTGGAGAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.1

64.7

37.9

Major BPS

44.8

-0.3

1.2

49.5

35.1

Major PPT

42.7

-0.4

1.6

34.8

Minor 5ss

37.4

-1.4

46.6

48.7

Minor BPS

31.2

-1.5

2.3

32.42

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025138

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032118

117267889 - 117310282

42394