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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117321389_117323001_F

Intron Information:

Intron Rank:
146843
Intron Class:
major
Intron Phase:
Intron Coordinates:
117321389 - 117323001
Intron Length:
1613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTAGTCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
0.9
80.7
31.6
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
81.8
0.72
0.9
86.8
24.5
Minor 5ss
40.5
-1.1
3.4
59.8
40
Minor BPS
63.4
0.5
1.7
80.16
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024111
117320762 - 117323263
2502