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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117323095_117323738_F

Intron Information:

Intron Rank:
146845
Intron Class:
major
Intron Phase:
Intron Coordinates:
117323095 - 117323738
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTAATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.7
0.6
1
82.3
26.7
Minor 5ss
44.7
-0.6
2.8
52.1
44.7
Minor BPS
50.5
0.01
2.1
71.85
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047255
117322640 - 117325073
2434
ENSAPLT00000034660
117322640 - 117325073
2434