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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117340141_117342605_F

Intron Information:

Intron Rank:
150790
Intron Class:
major
Intron Phase:
Intron Coordinates:
117340141 - 117342605
Intron Length:
2465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTACTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
74
38.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.2
0.82
0.8
80.1
37.1
Minor 5ss
34.1
-1.8
3.2
46.7
48.6
Minor BPS
66.6
0.6
1.6
84.49
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031020
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017803
117339776 - 117343395
3620