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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117445885_117450346_R

Intron Information:

Intron Rank:
140423
Intron Class:
major
Intron Phase:
Intron Coordinates:
117445885 - 117450346
Intron Length:
4462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
AGTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTCACATTCAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
85.5
0.8
0.8
77.4
41.2
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
46.3
-0.2
2.3
69.55
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022934
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040021
117445113 - 117450350
5238