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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11747925_11749603_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11747925 - 11749603
Intron Length:
1679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACCT
5'SS Class:
major
3'SS Sequence:
TTTTTCTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATACAGTTAATT
Flanking Amino Acid:
YPLSDYRQPQDFDYFTVDLE
Intron Amino Acid Position:
988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
62.6
42
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.8
0.81
0.7
86.1
27.2
Minor 5ss
32.9
-2
3.4
49.2
46.5
Minor BPS
48.7
-0
2.2
70.02
40.6

Associated Gene:

Gene:
MAGI2
Ensembl Gene ID:
ENSAPLG00000012418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012943
11484480 - 11769168
284689