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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11749748_11768886_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11749748 - 11768886
Intron Length:
19139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTACCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTCTTCTTACCT
Flanking Amino Acid:
GPAIRNGRMRVGDQIIEING
Intron Amino Acid Position:
1036

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
73.6
0.53
1
68.9
36.9
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
72.6
0.79
1.6
86.99
39.2

Associated Gene:

Gene:
MAGI2
Ensembl Gene ID:
ENSAPLG00000012418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012943
11484480 - 11769168
284689