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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117514321_117531278_F

Intron Information:

Intron Rank:
132146
Intron Class:
major
Intron Phase:
Intron Coordinates:
117514321 - 117531278
Intron Length:
16958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACAGA
5'SS Class:
major
3'SS Sequence:
GTGGATATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
67.4
39.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
68.1
0.41
1.1
62.9
46.9
Minor 5ss
32.7
-2
2.9
40
45.7
Minor BPS
63.5
0.28
1.6
67.71
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021013
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021384
117513516 - 117549694
36179