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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117539584_117548900_F

Intron Information:

Intron Rank:
132148
Intron Class:
major
Intron Phase:
Intron Coordinates:
117539584 - 117548900
Intron Length:
9317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
ATCTAAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CACATCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
67.3
0.39
1
60.2
39.6
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
48.8
-0
1.7
60.66
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021013
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021384
117513516 - 117549694
36179