Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117557638_117558105_R

Intron Information:

Intron Rank:

152271

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

117557638 - 117558105

Intron Length:

468

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCCGCT

5'SS Class:

weak_major

3'SS Sequence:

CTGTCTTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

AAAAAATTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.43

1.2

62.4

42.4

Major BPS

73.8

0.59

0.9

26.8

Major PPT

83.1

0.74

0.8

80.9

31.2

Minor 5ss

52.2

0.08

2.9

74.3

Minor BPS

45.3

-0.3

1.8

53.28

37.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029512

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043252

117557320 - 117558289

970