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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117674801_117678009_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
117674801 - 117678009
Intron Length:
3209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTCTGAGAAAA
Flanking Amino Acid:
KPFFWGTEYPRSLSYGAIGV
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
81.9
0.72
0.9
75.6
38.3
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
41.3
-0.6
2.3
59.93
39.2

Associated Gene:

Gene:
PHEX
Ensembl Gene ID:
ENSAPLG00000012570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028964
117664196 - 117763090
98895
ENSAPLT00000013128
117664196 - 117763090
98895