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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117678065_117689619_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117678065 - 117689619
Intron Length:
11555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTGCTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTGCTATTACA
Flanking Amino Acid:
AFYSASTNQIRFPAGELQKP
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.6
33.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
83.4
0.75
0.8
77.2
35.8
Minor 5ss
32.8
-2
2.7
42.3
38.4
Minor BPS
51.7
0.05
2
72.06
39.9

Associated Gene:

Gene:
PHEX
Ensembl Gene ID:
ENSAPLG00000012570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028964
117664196 - 117763090
98895
ENSAPLT00000013128
117664196 - 117763090
98895