Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117699618_117718044_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117699618 - 117718044

Intron Length:

18427

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATAAAT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TCTTTTTCAAAG

Flanking Amino Acid:

SETKRKAYEKAKAVMAKVGY

Intron Amino Acid Position:

467

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

82.6

29.4

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

78.8

0.65

81.4

27.9

Minor 5ss

35.2

-1.7

49.1

46.7

Minor BPS

52.9

-0

1.7

60.04

42.2

Associated Gene:

Gene:

PHEX

Ensembl Gene ID:

ENSAPLG00000012570

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028964

117664196 - 117763090

98895

ENSAPLT00000013128

117664196 - 117763090

98895