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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117735472_117738169_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117735472 - 117738169
Intron Length:
2698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
GATAACTTCATT
Flanking Amino Acid:
YLENTTEAKSYRDAFLQFMV
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.5
41.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
48.8
-0
2
68
42.4

Associated Gene:

Gene:
PHEX
Ensembl Gene ID:
ENSAPLG00000012570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028964
117664196 - 117763090
98895
ENSAPLT00000013128
117664196 - 117763090
98895