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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117738239_117741178_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117738239 - 117741178
Intron Length:
2940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGATA
5'SS Class:
major
3'SS Sequence:
TTATTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATTTTTAACA
Flanking Amino Acid:
DKISNRYILKLDQASLSLSS
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
72.2
38.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.9
0.76
0.9
81.2
35
Minor 5ss
34.1
-1.8
3.5
48.2
47.5
Minor BPS
80.5
0.95
1
83.59
30.1

Associated Gene:

Gene:
PHEX
Ensembl Gene ID:
ENSAPLG00000012570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028964
117664196 - 117763090
98895
ENSAPLT00000013128
117664196 - 117763090
98895