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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117756971_117758646_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117756971 - 117758646
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTCTTACTT
Flanking Amino Acid:
YCLTSECIEAAAAILSKINK
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.1
36.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.3
0.73
0.7
77.3
30.4
Minor 5ss
39.8
-1.1
2.9
48.9
41.6
Minor BPS
70.9
0.74
1.5
85.57
35

Associated Gene:

Gene:
PHEX
Ensembl Gene ID:
ENSAPLG00000012570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028964
117664196 - 117763090
98895
ENSAPLT00000013128
117664196 - 117763090
98895