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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117784608_117793893_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117784608 - 117793893
Intron Length:
9286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTATTATAACC
Flanking Amino Acid:
LKQDGKYFTQGNCINLTDAL
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.4
29.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
89.1
0.88
0.6
89
20.2
Minor 5ss
45.7
-0.5
2.9
64.3
47.2
Minor BPS
62.3
0.36
1.6
75.58
34.4

Associated Gene:

Gene:
SMS
Ensembl Gene ID:
ENSAPLG00000013124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042177
117780234 - 117838870
58637
ENSAPLT00000037291
117780234 - 117802068
21835