Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117793974_117794513_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117793974 - 117794513

Intron Length:

540

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAATTTT

5'SS Class:

major

3'SS Sequence:

ACTCTATACGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTTTTTTAATC

Flanking Amino Acid:

AVPISTSPEEDSTWEFLRLI

Intron Amino Acid Position:

291

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

1.1

82.4

31.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

68.3

0.41

0.9

62.6

37.1

Minor 5ss

41.8

-0.9

2.9

45.4

Minor BPS

75.8

0.79

1.1

78.23

31.1

Associated Gene:

Gene:

SMS

Ensembl Gene ID:

ENSAPLG00000013124

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042177

117780234 - 117838870

58637

ENSAPLT00000037291

117780234 - 117802068

21835

ENSAPLT00000013716

117792517 - 117825279

32763