About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117796827_117798653_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117796827 - 117798653
Intron Length:
1827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CTTTCTTCCATT
Flanking Amino Acid:
GNILILSGDVNLAESDLAYT
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.9
32.8
Major BPS
65
0.37
1.3
76.1
38
Major PPT
83.3
0.75
0.8
81.8
29.1
Minor 5ss
40.2
-1.1
2.8
54.6
37.1
Minor BPS
52.9
0.17
2
75.4
42.3

Associated Gene:

Gene:
SMS
Ensembl Gene ID:
ENSAPLG00000013124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042177
117780234 - 117838870
58637
ENSAPLT00000037291
117780234 - 117802068
21835
ENSAPLT00000013716
117792517 - 117825279
32763