Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117798830_117800982_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117798830 - 117800982

Intron Length:

2153

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TCCTTCTTATTT

Flanking Amino Acid:

LFHGNIKRVKRLPAILRGGA

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

32.6

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

92.1

0.95

0.7

85.1

34.9

Minor 5ss

-1

2.7

51.5

44.9

Minor BPS

62.6

0.48

1.6

74.56

43.3

Associated Gene:

Gene:

SMS

Ensembl Gene ID:

ENSAPLG00000013124

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042177

117780234 - 117838870

58637

ENSAPLT00000037291

117780234 - 117802068

21835

ENSAPLT00000013716

117792517 - 117825279

32763