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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117801889_117801988_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
117801889 - 117801988
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCCTTCTT
5'SS Class:
weak_major
3'SS Sequence:
CCTTGTCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTAAACAAAATC
Flanking Amino Acid:
TEPTNCWKKNCFANLRIYPH
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.4
0.11
1.4
58.4
46
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.3
0.64
0.8
72.9
31.9
Minor 5ss
34.7
-1.7
3.2
47.9
42.7
Minor BPS
44.3
-0.4
2
58.21
40.3

Associated Gene:

Gene:
SMS
Ensembl Gene ID:
ENSAPLG00000013124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037291
117780234 - 117802068
21835