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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117801889_117810579_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
117801889 - 117810579
Intron Length:
8691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTAAACAAAATC
Flanking Amino Acid:
YLATYIQKNGSFANLRIYPH
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.3
0.64
0.8
72.9
31.9
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
44.3
-0.4
2
58.21
40.3

Associated Gene:

Gene:
SMS
Ensembl Gene ID:
ENSAPLG00000013124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013716
117792517 - 117825279
32763
ENSAPLT00000042177
117780234 - 117838870
58637