Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117810701_117825224_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117810701 - 117825224

Intron Length:

14524

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCCGTG

5'SS Class:

major

3'SS Sequence:

TTCTATCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TCTTCATTGACT

Flanking Amino Acid:

STLDFMLGATADCNAVLKAL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.9

0.38

1.3

58.2

46.8

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

86.1

0.81

0.8

80.8

30.8

Minor 5ss

44.4

-0.6

3.5

64.2

47.3

Minor BPS

74.2

0.84

1.6

88.62

36.3

Associated Gene:

Gene:

SMS

Ensembl Gene ID:

ENSAPLG00000013124

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042177

117780234 - 117838870

58637

ENSAPLT00000013716

117792517 - 117825279

32763