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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117856237_117857610_R

Intron Information:

Intron Rank:
10
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
117856237 - 117857610
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TAATGTCAATCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGATCCTTAACT
Flanking Amino Acid:
DLPVVIETFCKYLISLSGAL
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.2
65.1
41.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62.4
0.28
1.1
60.6
44.5
Minor 5ss
95.8
1.54
0.7
90.3
20.6
Minor BPS
88.3
1.28
0.9
94.24
32.5

Associated Gene:

Gene:
MBTPS2
Ensembl Gene ID:
ENSAPLG00000013395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017197
117855203 - 117885806
30604
ENSAPLT00000013969
117855203 - 117886409
31207