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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117868750_117869724_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117868750 - 117869724
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
TATGACTGACCT
Flanking Amino Acid:
VGALVTEVTEDSPANGPRGL
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
86.1
0.81
0.7
84.7
30.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
48.3
-0
2
71.21
45

Associated Gene:

Gene:
MBTPS2
Ensembl Gene ID:
ENSAPLG00000013395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013969
117855203 - 117886409
31207
ENSAPLT00000017197
117855203 - 117885806
30604