About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117876295_117880120_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
117876295 - 117880120
Intron Length:
3826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCACATGAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CCCACATGAACA
Flanking Amino Acid:
AQNDRMLQVVVPGVNLPVSQ
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
55.7
0.13
1
49.8
37
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
47.3
-0.2
1.8
54
44.1

Associated Gene:

Gene:
MBTPS2
Ensembl Gene ID:
ENSAPLG00000013395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013969
117855203 - 117886409
31207
ENSAPLT00000017197
117855203 - 117885806
30604