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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117882114_117886334_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117882114 - 117886334
Intron Length:
4221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CATTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GTTAAACTAACT
Flanking Amino Acid:
AVYLADTLLKSSSSLKASYE
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
82.6
0.73
0.9
76.6
37.2
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
47.7
-0
2.1
73.4
42.1

Associated Gene:

Gene:
MBTPS2
Ensembl Gene ID:
ENSAPLG00000013395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013969
117855203 - 117886409
31207