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Intron Name: Anas_platyrhynchos_platyrhynchos_1_117898520_117901058_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

117898520 - 117901058

Intron Length:

2539

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGGT

5'SS Class:

strong_major

3'SS Sequence:

ATTTTGCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

GAGCCTGTAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.9

35.3

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

83.9

0.76

0.8

77.8

Minor 5ss

32.2

-2

3.5

47.6

47.9

Minor BPS

48.7

-0.1

58.64

40.9

Associated Gene:

Gene:

SMPX

Ensembl Gene ID:

ENSAPLG00000018333

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026553

117898436 - 117909897

11462