About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117900046_117901058_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
117900046 - 117901058
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATATTTC
5'SS Class:
major
3'SS Sequence:
ATTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
GAGCCTGTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
70
34.9
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
83.9
0.76
0.8
77.8
36
Minor 5ss
51.3
0.05
2.5
66.5
40.1
Minor BPS
48.7
-0.1
2
58.64
40.9

Associated Gene:

Gene:
SMPX
Ensembl Gene ID:
ENSAPLG00000018333
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027035
117899811 - 117909897
10087