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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117901119_117905003_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117901119 - 117905003
Intron Length:
3885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTCCTTTTCACA
Flanking Amino Acid:
QPASHVKAIQANINIPMGAF
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
86.7
0.83
0.7
82.7
25.9
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
54.8
0.14
1.7
67.58
39.4

Associated Gene:

Gene:
SMPX
Ensembl Gene ID:
ENSAPLG00000018333
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026553
117898436 - 117909897
11462
ENSAPLT00000027035
117899811 - 117909897
10087