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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118002588_118007949_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
118002588 - 118007949
Intron Length:
5362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
ATGTAATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATGTATGTAATT
Flanking Amino Acid:
AERERIKQEQDYWSESDKEE
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
70
0.45
1
63.4
42.2
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
49
0.01
2.1
70.69
41

Associated Gene:

Gene:
CNKSR2
Ensembl Gene ID:
ENSAPLG00000013780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026218
117959823 - 118180843
221021
ENSAPLT00000047951
117959823 - 118180843
221021
ENSAPLT00000021556
117959823 - 118180843
221021
ENSAPLT00000042655
117959823 - 118180564
220742
ENSAPLT00000014394
117959823 - 118180564
220742
ENSAPLT00000036513
117959823 - 118180843
221021
ENSAPLT00000030725
117959823 - 118180843
221021