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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118018790_118019762_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
118018790 - 118019762
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TCCACATCAACT
Flanking Amino Acid:
LQQKSKKKNKAPIPGKSKRR
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.3
0.84
0.8
85.4
34.1
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
51.4
0.12
1.9
70.3
46

Associated Gene:

Gene:
CNKSR2
Ensembl Gene ID:
ENSAPLG00000013780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030725
117959823 - 118180843
221021
ENSAPLT00000026218
117959823 - 118180843
221021
ENSAPLT00000047951
117959823 - 118180843
221021
ENSAPLT00000021556
117959823 - 118180843
221021
ENSAPLT00000042655
117959823 - 118180564
220742
ENSAPLT00000014394
117959823 - 118180564
220742
ENSAPLT00000036513
117959823 - 118180843
221021