About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118019812_118041484_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118019812 - 118041484
Intron Length:
21673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
GATTTTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGTTTTGATT
Flanking Amino Acid:
TPGPETTLYHTFQQSSLQQK
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.3
31.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.4
0.66
0.8
74.1
36.3
Minor 5ss
31
-2.2
2.6
32.5
35.1
Minor BPS
66.4
0.6
1.3
81.5
34.7

Associated Gene:

Gene:
CNKSR2
Ensembl Gene ID:
ENSAPLG00000013780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014394
117959823 - 118180564
220742
ENSAPLT00000036513
117959823 - 118180843
221021
ENSAPLT00000030725
117959823 - 118180843
221021
ENSAPLT00000026218
117959823 - 118180843
221021
ENSAPLT00000047951
117959823 - 118180843
221021
ENSAPLT00000021556
117959823 - 118180843
221021
ENSAPLT00000042655
117959823 - 118180564
220742