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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118041700_118043320_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
118041700 - 118043320
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTGCATTACTT
Flanking Amino Acid:
PNKIKRDSRRENSLLRYMSN
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
81.5
0.71
0.8
78
29.4
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
57.3
0.31
2
80.74
41.5

Associated Gene:

Gene:
CNKSR2
Ensembl Gene ID:
ENSAPLG00000013780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026218
117959823 - 118180843
221021
ENSAPLT00000021556
117959823 - 118180843
221021
ENSAPLT00000047951
117959823 - 118180843
221021
ENSAPLT00000014394
117959823 - 118180564
220742
ENSAPLT00000036513
117959823 - 118180843
221021
ENSAPLT00000030725
117959823 - 118180843
221021