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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118041700_118046656_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
118041700 - 118046656
Intron Length:
4957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGCGT
5'SS Class:
major
3'SS Sequence:
TTTCTTCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTGCATTACTT
Flanking Amino Acid:
PGRRESTPTYENSLLRYMSN
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
58.7
45.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
81.5
0.71
0.8
78
29.4
Minor 5ss
38.7
-1.3
3.4
53
46
Minor BPS
57.3
0.31
2
80.74
41.5

Associated Gene:

Gene:
CNKSR2
Ensembl Gene ID:
ENSAPLG00000013780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042655
117959823 - 118180564
220742