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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118050010_118059677_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118050010 - 118059677
Intron Length:
9668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAG
5'SS Class:
major
3'SS Sequence:
TCTTTTGTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TCTTTTGTACCA
Flanking Amino Acid:
NMRWKPLALQPLIPRSPTSS
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
71.5
39.9
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
79.4
0.66
0.9
73.7
40.6
Minor 5ss
31.7
-2.1
3.1
39.3
46.2
Minor BPS
48.1
-0.1
2.2
65.59
41.9

Associated Gene:

Gene:
CNKSR2
Ensembl Gene ID:
ENSAPLG00000013780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026218
117959823 - 118180843
221021
ENSAPLT00000036513
117959823 - 118180843
221021
ENSAPLT00000030725
117959823 - 118180843
221021