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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118050010_118081035_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118050010 - 118081035
Intron Length:
31026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TCTTTTGTACCA
Flanking Amino Acid:
LHVITGTTENPLIPRSPTSS
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
79.4
0.66
0.9
73.7
40.6
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
48.1
-0.1
2.2
65.59
41.9

Associated Gene:

Gene:
CNKSR2
Ensembl Gene ID:
ENSAPLG00000013780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014394
117959823 - 118180564
220742