Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118059825_118075703_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

118059825 - 118075703

Intron Length:

15879

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTATGTATA

5'SS Class:

strong_major

3'SS Sequence:

TACTGGTTACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

TGTACCTCAATT

Flanking Amino Acid:

EVIQVNHQTVVGWQLKNLVN

Intron Amino Acid Position:

271

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

81.5

31.6

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

66.9

0.38

1.1

58.5

45.9

Minor 5ss

45.5

-0.5

2.5

56.3

43.3

Minor BPS

67.9

0.64

1.6

82.29

38.8

Associated Gene:

Gene:

CNKSR2

Ensembl Gene ID:

ENSAPLG00000013780

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036513

117959823 - 118180843

221021