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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118087863_118100399_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118087863 - 118100399
Intron Length:
12537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTTATTATAT
Flanking Amino Acid:
YETENKILHVCKTLSGVCDH
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.6
0.76
0.7
77.5
31.2
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
51.3
0.12
1.9
75.11
41.1

Associated Gene:

Gene:
CNKSR2
Ensembl Gene ID:
ENSAPLG00000013780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014394
117959823 - 118180564
220742
ENSAPLT00000036513
117959823 - 118180843
221021
ENSAPLT00000030725
117959823 - 118180843
221021
ENSAPLT00000026218
117959823 - 118180843
221021
ENSAPLT00000047951
117959823 - 118180843
221021
ENSAPLT00000021556
117959823 - 118180843
221021
ENSAPLT00000042655
117959823 - 118180564
220742