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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118116800_118130312_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118116800 - 118130312
Intron Length:
13513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATT
Flanking Amino Acid:
AAKSLLAWLDRSPFAAVTDY
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
31.3
Major BPS
100
1.24
0.5
100
0
Major PPT
85.6
0.8
0.7
84.8
29.7
Minor 5ss
39.9
-1.1
3.2
57.4
46.8
Minor BPS
60.5
0.41
1.7
78.3
39.3

Associated Gene:

Gene:
CNKSR2
Ensembl Gene ID:
ENSAPLG00000013780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021556
117959823 - 118180843
221021
ENSAPLT00000042655
117959823 - 118180564
220742
ENSAPLT00000014394
117959823 - 118180564
220742
ENSAPLT00000036513
117959823 - 118180843
221021
ENSAPLT00000030725
117959823 - 118180843
221021
ENSAPLT00000026218
117959823 - 118180843
221021
ENSAPLT00000047951
117959823 - 118180843
221021