Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11816481_11817235_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11816481 - 11817235

Intron Length:

755

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTAACTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAC

U12 Branch Point Sequence:

ACTGCTTTAACT

Flanking Amino Acid:

ISDLLGFNLKLWKIKS*

Intron Amino Acid Position:

752

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.1

1.13

0.6

93.5

20.3

Major BPS

77.3

0.68

79.3

29.4

Major PPT

83.5

0.75

0.8

36.2

Minor 5ss

38.4

-1.3

2.8

52.3

44.3

Minor BPS

73.4

0.81

1.3

81.74

40.3

Associated Gene:

Gene:

PHTF2

Ensembl Gene ID:

ENSAPLG00000012275

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012860

11815824 - 11868631

52808

ENSAPLT00000032328

11814494 - 11868631

54138

ENSAPLT00000020118

11814494 - 11868631

54138