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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_118222872_118230436_R

Intron Information:

Intron Rank:
149521
Intron Class:
major
Intron Phase:
Intron Coordinates:
118222872 - 118230436
Intron Length:
7565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAGC
5'SS Class:
major
3'SS Sequence:
TTCTCTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAGTAT
U12 Branch Point Sequence:
TTCTCTCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
41.5
Major BPS
52
0.05
1.4
52
43.5
Major PPT
79.1
0.65
0.9
76
32.6
Minor 5ss
39.1
-1.2
3
52.1
44.7
Minor BPS
63
0.4
1.7
74.93
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021946
118220777 - 118231165
10389